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#24 Read correction and Bcool with Antoine Limasset
Manage episode 215964325 series 1537951
Contenido proporcionado por Roman Cheplyaka. Todo el contenido del podcast, incluidos episodios, gráficos y descripciones de podcast, lo carga y proporciona directamente Roman Cheplyaka o su socio de plataforma de podcast. Si cree que alguien está utilizando su trabajo protegido por derechos de autor sin su permiso, puede seguir el proceso descrito aquí https://es.player.fm/legal.
Antoine Limasset joins me to talk about NGS read correction. Antoine and his colleagues built the read correction tool Bcool based on the de Bruijn graph, and it corrects reads far better than any of the current methods like Bloocoo, Musket, and Lighter.
We discuss why and when read correction is needed, how Bcool works, and why it performs better but slower than k-mer spectrum methods.
Links:
- Preprint: Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
- Bcool on GitHub
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodios
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Manage episode 215964325 series 1537951
Contenido proporcionado por Roman Cheplyaka. Todo el contenido del podcast, incluidos episodios, gráficos y descripciones de podcast, lo carga y proporciona directamente Roman Cheplyaka o su socio de plataforma de podcast. Si cree que alguien está utilizando su trabajo protegido por derechos de autor sin su permiso, puede seguir el proceso descrito aquí https://es.player.fm/legal.
Antoine Limasset joins me to talk about NGS read correction. Antoine and his colleagues built the read correction tool Bcool based on the de Bruijn graph, and it corrects reads far better than any of the current methods like Bloocoo, Musket, and Lighter.
We discuss why and when read correction is needed, how Bcool works, and why it performs better but slower than k-mer spectrum methods.
Links:
- Preprint: Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
- Bcool on GitHub
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodios
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Similar a the bioinformatics chat
How can we, humans, look at our relationship to nature differently? In season three of Going Wild, on top of stories about animals, we invite you to journey through the entire ecological web — from the tiniest of life forms to apex predators — alongside the scientists, activists and adventurers who study it. Wildlife biologist and host Dr. Rae Wynn-Grant has been studying wild animals in their natural habitats all over the world for years. Our award-winning podcast takes you inside the hidde ...
…
continue reading
A myriad of AI, science, and technology experts explore the real challenges and enormous opportunities facing entrepreneurs who are building the future of health. Raising Health, a podcast by a16z Bio + Health and hosted by Kris Tatiossian and Olivia Webb, dives deep into the heart of biotechnology and healthcare innovation. Join veteran company builders, operators, and investors Vijay Pande, Julie Yoo, Vineeta Agarwala, and Jorge Conde, along with distinguished guests like Mark Cuban, Greg ...
…
continue reading
How many organs could you donate and remain alive? How many planet Earths could fit inside the Sun? How high is a giraffe's blood pressure? Why is the sea blue? To find out, Ask The Naked Scientists!
…
continue reading
This Week in Microbiology is a podcast about unseen life on Earth hosted by Vincent Racaniello and friends. Following in the path of his successful shows 'This Week in Virology' (TWiV) and 'This Week in Parasitism' (TWiP), Racaniello and guests produce an informal yet informative conversation about microbes which is accessible to everyone, no matter what their science background.
…
continue reading
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…
continue reading
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…
continue reading
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…
continue reading
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continue reading
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continue reading
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continue reading
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